NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180437_10233372

Scaffold Ga0180437_10233372


Overview

Basic Information
Taxon OID3300017963 Open in IMG/M
Scaffold IDGa0180437_10233372 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1428
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.3Long. (o)-115.8Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000710Metagenome / Metatranscriptome925Y
F002259Metagenome / Metatranscriptome577Y
F036684Metagenome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0180437_102333721F002259N/ATRVIYDQSTTAALSHTLFAGASQRNFPLTNLGANGNQFQVDEALLVEQIGFFIPDAEDGQNYGNLSGVSVKFDLVIGNKTVIKDAVVEYGGQQAFYNDGTAGSSILTLEGAGILIPPQVEFYVRASTFLSRSRTNTNSRLGCYLFGTAALLNFNTSI
Ga0180437_102333722F036684N/AMASQVSKLNYVDAKLGAPTSGQQTTRYIYDSVLPGAGGTNVTFFQNFAGKTEFQTNLTTNKLDSMESMVIKSIYMAISPGTAGTLTLTGHLNLNIFVGNQCVLKDFDPSFNATNRGLAFDRLHSGLNDDRYLEVRLLTDIVIPPQVNFKATLELAENTAVADTSITLGLKGYGKIFSAGMSF
Ga0180437_102333723F000710N/AMAQLTDISYRQGIRSKGFQVSVPTTGANQTLSLSGLAKSFEGILLSSTTGAAPGTIIDPAQLRITLTINNDVCIDDDVAFHYAITSTGSFSGGFPFFIPIPRRLTGQDTILLRVTNASGATQILNVTVW

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