NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180437_10116909

Scaffold Ga0180437_10116909


Overview

Basic Information
Taxon OID3300017963 Open in IMG/M
Scaffold IDGa0180437_10116909 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2217
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.3Long. (o)-115.8Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021885Metagenome / Metatranscriptome217Y
F049303Metagenome / Metatranscriptome147Y
F090093Metagenome108N
F091957Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0180437_101169092F091957AGGAGGMRGNTTAIDVATLRLQWASHSSMASICSFWTVSRDQLIRLRDVHRLPKRHDRTKRRKPEREPEPSRAELRASEATLDLAPRIAKQAALVQARWSDAVRENRHWRKPQLFSVPLVQVDIEPDDDADL
Ga0180437_101169093F021885AGGAGMNLFEKLRLLAEWSPLLTFAQQLAAEEDIHAKAVIVSEAMEWVASRTEVEWDDELASHISDILVSEEGEAFVRWILDRMQVNDDRVSE
Ga0180437_101169094F049303AGGMTEFLSDPVRVLAVVAAVAVLVVPYLPAIAKQLRAAWSSLPTVPDAKGDGIGVSDLTTVLDLANRLRVSGNEKATDLAKQLLDAMLEVPQK
Ga0180437_101169095F090093GAGGMNLRTIVALGAIYVAVFGLPDVQLPTPSAPERPTVEKPSAELQEAVADVASICERMNTFDRLVWMSTWEDCSAIVAGEDEDVSVTFDNTLGLRLFTDSTFQVAWNRLANASGKYRGLAEAVEKAFTNVIGNEVRQWSAEVAGDVIDLYDALAWAGARSE
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