Scaffold Ga0180437_10050137

Overview

Basic Information

• Taxon OID: 3300017963
• Scaffold ID: Ga0180437_10050137
• Source Dataset Name: Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3899
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.3
  • Long. (^o): -115.8
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026885	Metagenome / Metatranscriptome	196	N
F028498	Metagenome / Metatranscriptome	191	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0180437_100501371	F026885	N/A	MIEVGKYSIVSLQEAVESAKEMLRIQDTTEFDGFLLRKADEAMRHIGDDTTYAKRACTLDIVDGRAKLPMGFIRLLGARMSDSNGNCFDQPYLDLPYLTDCGCENVANINNGFNNPFQIQEGYLVFHSPSDLETDTIRIAYISRSVDDDGLMLMSERHERAIEAYLCYQFTLSFFENYPVNIRQ
Ga0180437_100501372	F028498	GAG	LKTLECIELIQLADEGGIFTDESRFDRGTMLTVLNAARAFAITEMYSKNTRVHPNFIQRIYPEYKEALQQDDCYNLFEIPRTVAINDKMDGLMYVGSIKGNEAYWKVRTRMQLNSRRNHRVHKLAMNKHVHYLYDSTRGYLEIYDDKVKYPLVEGIFEDPTSVPQFSLEHDEYPITSDVMKRIEDLVRRGTILDSVRIPVNKISNSQEDSNVQRDTQTK