NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180437_10048235

Scaffold Ga0180437_10048235


Overview

Basic Information
Taxon OID3300017963 Open in IMG/M
Scaffold IDGa0180437_10048235 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4003
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.3Long. (o)-115.8Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033811Metagenome / Metatranscriptome176N
F066285Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0180437_100482351F066285N/ANVVYFNRPEVHKNYVWSDGNRYFDGFLGDDNSVYRKTSGVPVKEPDAIYWTERPKPVSDDDE
Ga0180437_100482353F033811N/AMDTNITQAFFEAIDYSHVKHIIRSNSSIKSYWGGKTPSIADLKRVIKNMWERVSKHESAEDCVNGIVMIKNGSDIRIDFLYLSYSLRNAVQSSGDNQEETQQASEPEKVSSLILP

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