Scaffold Ga0180437_10045013

Overview

Basic Information

• Taxon OID: 3300017963
• Scaffold ID: Ga0180437_10045013
• Source Dataset Name: Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4196
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.3
  • Long. (^o): -115.8
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007919	Metagenome / Metatranscriptome	342	Y
F029435	Metagenome / Metatranscriptome	188	Y
F063622	Metagenome / Metatranscriptome	129	Y
F086835	Metagenome / Metatranscriptome	110	Y
F093779	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180437_100450131	F029435	N/A	PEFLSTLHTVVECCNWDVDMIETMEFCDWCYNMAGQPKPQYDMGIMMEDEE
Ga0180437_1004501313	F063622	GAGG	MKLHEQLTEWYYTHNAVQSGGVIANEIVDVVKCWIKSHHREETKYDADYNAGWMDCIETLEKDAR
Ga0180437_100450135	F007919	N/A	MTERVKFTQVSRVICPKTRIHYLDAVDTEGFHWTAQQETGRERWITWKQNWKKDNSQPWD
Ga0180437_100450137	F086835	AGGAG	MGEKYQRIIKPQSFYDKLYGLLKTKLGDSVECDEMTDRVRDLIRENIPEYKKGIGLQEYHLGYNDGLLRVNQNLFK
Ga0180437_100450139	F093779	AGAAG	MRIEITQDPSGTGDYRWELHTGAEHIDEYTGYCYSLGECFEEIVKWNTLNALHYTEETETEKLNLLHRWKTKND