Scaffold Ga0180437_10031204

Overview

Basic Information

• Taxon OID: 3300017963
• Scaffold ID: Ga0180437_10031204
• Source Dataset Name: Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5401
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (95.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.3
  • Long. (^o): -115.8
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026571	Metagenome / Metatranscriptome	197	N
F077331	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180437_1003120418	F077331	AGGGGG	MDNQTKKQGQEYSNNVIDSMKDILNIKDEDQKQEEIFNYGLSISKETIINYLISWGGPAYRLQITFNEDKELVSIKPQYQDWGTYWVTMETTEEQDKIIKQFVSSLYLEETLYNE
Ga0180437_100312043	F026571	GGA	MKKYRVNVVGTKYVTTDTEDKAIEHTQEMLDHIHKSLNMQVFSIAEVREEE