Scaffold Ga0180437

Basic Information
Taxon OID	3300017963 Open in IMG/M
Scaffold ID	Ga0180437_10016977 Open in IMG/M
Source Dataset Name	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300017963 Open in IMG/M

Scaffold ID

Ga0180437_10016977 Open in IMG/M

Source Dataset Name

Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8183
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (25.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8183

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (25.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.3	Long. (^o)	-115.8	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.3

Long. (^o)

-115.8

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057297	Metagenome	136	Y
F061809	Metagenome	131	N
F062579	Metagenome	130	N
F063641	Metagenome	129	Y
F072292	Metagenome	121	N
F073481	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0180437_1001697712	F063641	N/A	MDILINNPDNIPWWLVFDIMETVADQHPDFKKIAPYKAKFGREGRVYELELKSESNAVITKAAKER
Ga0180437_1001697714	F072292	AGG	MKKKFKHFAVFVNDLGFNEDTNERSDSSFCGDIDFFEILAKDEDEMMNLIDVMIEQGILIDDEYDIGESIDIFDINNYDTNLN
Ga0180437_1001697715	F073481	N/A	MNSQQAYDYEEHILNQHQNTNFIFSVIIDIIKGLDEMIYLLDDKGEIKLNAKGKPRINWIKVIKNLAKIIGALMAMRKKAVW
Ga0180437_1001697716	F062579	AGAAGG	MVRIATTSMGYYHASEHYRIQGPFERMAEDNQIVFDRLSDQDIADGELANYDIFFFWNPSHPKSLAYIKAAQLAKCKVWIDFDDNWAEIPMYHPHSWRTNPTFQKELNKKIVSEATVVTVTTEELYELAKQYNSNTHIVPNALPFKINKDYRKKNKIIGWRGSDRHMEDIRSGMKGLIKDNRLTYHFVGFSPWYLYDAKIDYSYTTWSNTLREYFNNLYTINMEYCWIPMINNAFNRSVSNIAFLEATSVGAVSIIPEWLQEFNVAHSLWYKNHKELKTILTKIANGELDEVRNRYLTECVKVINEKYILNETNKIRKNIIESLT
Ga0180437_100169772	F057297	GAG	MTPKEKAQDLVNQFRIILMNEDTDCGNEILCTSIAIKNAMICAEEVMHRVPYANKMGAHWISDDLMVDYWVEVRKELRKM
Ga0180437_100169774	F061809	N/A	MQSEQQTIQFAHEYAQALAMVVVENLMQKELESKKDGNKIRANAIQECVEQIKLGFKIDS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0180437_10016977

Overview

Ecosystem & Geography

Associated Families

Sequences