NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180437_10011093

Scaffold Ga0180437_10011093


Overview

Basic Information
Taxon OID3300017963 Open in IMG/M
Scaffold IDGa0180437_10011093 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10867
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (23.81%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium ADurb.Bin080(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.3Long. (o)-115.8Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048639Metagenome148Y
F053982Metagenome140N
F054452Metagenome / Metatranscriptome140N
F077195Metagenome / Metatranscriptome117Y
F079390Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0180437_1001109311F077195N/AMNNYIPTLEGDEAEEFVRKADENVRLMRQRRCKEHVWRKDYLNGGKKCQVCSKAQEEVKRSKDVEE
Ga0180437_1001109314F048639N/AMNEIESAYHNAYLLITGRTTYDELAENDVFYLPENHEDPQVVLKYYESIEDYEKCKEIMSLTHEGKG
Ga0180437_100110932F054452GAGMSDELKMWLLKDLMFGKDVWDHENNPEIMELHDFGYVKVYDSNTQFAATTELGVQELSRLIKLYFVFLN
Ga0180437_100110935F079390N/AMDKPKNMKELKDRLRPFVNMDNEVMISKEAKVLHVGKMIRSHVSILEANPKNRVYMPYWDRLIILLSILESGWE
Ga0180437_100110938F053982N/AMKKKQRMHYYGVLATYNPYDDMWYSFHKDDAVLYFVDRNAVTSGKGKDALSAMNDYLSKKITSALY
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