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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017963 Open in IMG/M |
| Scaffold ID | Ga0180437_10006749 Open in IMG/M |
| Source Dataset Name | Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15172 |
| Total Scaffold Genes | 18 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (22.22%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 33.3 | Long. (o) | -115.8 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F026885 | Metagenome / Metatranscriptome | 196 | N |
| F028498 | Metagenome / Metatranscriptome | 191 | N |
| F033811 | Metagenome / Metatranscriptome | 176 | N |
| F066285 | Metagenome / Metatranscriptome | 127 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0180437_1000674914 | F033811 | N/A | MNTNITQAFFEAIDYSHVKHIIRSNRSIKAHWGGKSPSVSDIKRVISNMWERVSQYEAAEDCVNGIVMIKNGNNVRIDFLYLSYSLRTEEVQPDSQVENQQEIQADEEAS |
| Ga0180437_1000674916 | F066285 | N/A | MKTADMNKKTWNVIYFNRPDVHRNVVFSDGKRYFDGFLGSDNSVYRKTSGAPVKEPDAVYWTERPKVTSDDEE |
| Ga0180437_100067492 | F026885 | N/A | MIEVGKYSIISLQEAVESAKEMLRIQDTTEFDGFLLRKADEAMRHIGDDTTYAKRACTLDIIDGRAKLPMGFIRLLGARMSDSNGNCFEQPYLDLPYLTDCGCETIANINNGFDNPFQIQEGYIVFHAPSDLETDTIRIAYISRSVDDDGLMLMSERHERAIEAYLCYQFTLSFFENYPVNIRQEYKNTWKNQKQHLKGMSQRERFEENKREIAAILNAWIISDRNDR |
| Ga0180437_100067493 | F028498 | GAG | LKTLECIELLQLADEGGVFTDESRYDIGTMLTVLNAARAFAITEMYRKNNRVHPNFIQRVYPEYKEAIQQDDCYNLFEIPRTVEINDKMDGLMYVGSIKGNEAYWKIRTRMQLNSRRNQRVHKLAMNKHTHFLYDATRGYLEIYDPKVKYPLVEGVFEDPTSVPQFSFDHDEYPITGDAMKRIEDLVRRGTILDSVRVPVNKISNSQEDSSVQRDVQTK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |