Scaffold Ga0180437_10002571

Overview

Basic Information

• Taxon OID: 3300017963
• Scaffold ID: Ga0180437_10002571
• Source Dataset Name: Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28644
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (33.33%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.3
  • Long. (^o): -115.8
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006492	Metagenome / Metatranscriptome	372	Y
F045065	Metagenome	153	N
F053970	Metagenome	140	N
F066601	Metagenome	126	N
F078759	Metagenome / Metatranscriptome	116	N
F079930	Metagenome	115	N
F085547	Metagenome	111	Y
F093697	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0180437_1000257111	F078759	N/A	MDKKDILLFITERTAQLEMMAARRFSGKMTKTEVKAYEETYKAIHGNARVCFSCGNSAQTMARVMLKFAEENKPKPRPKRRRKK
Ga0180437_1000257116	F053970	AGAAGG	MMTCHSKRQAAIDLLADDELRELAVRICHRFADDLIQEAAMVILEMDEQKWEKVNDGGYLRYYVVRTMMTMATSPRSTFARKHGLFAHSTEIPDIADDADGYDWDQEDDMMIIEALLDSYHWYDKEVLRLWLQEGSYRKVSKKVDIPFKSIGNSVRRTLDQLKEDYYGIILQRCISSGHRITSNRSDKHSDVH
Ga0180437_1000257119	F093697	GAG	MIQQATIHKLPLLVGCKQFDRSPDGQMLMDIIARFVDAEFPHIDDFKLVTAFQKAASGSLSLNNKPLTLSTYGQQLSPKVVGEVLRAFQQTERSKASQPKFQPKQLEAASDPIDAPFMYQWTINYLQEHGRLPEFPMWGLLYQYLLERNEVKALPNEKPQGRFALMQEDNRYEQTVTRWFRSNGIV
Ga0180437_1000257132	F066601	AGAAG	MDRQLLISLFRSVWPYIVTFLLGVLVAWKGCGTGAKTITETIEIEKPVYRTEYVDRWKTDTVRFVERVTVTDTVTNTIIKEREVLKVDTVKIIQAWLTEVNKYDTTITLADGSLNATWFNYQNVTEEAAFTYTSNVQKAPMYGVGIHASIEAQTDFIEKVTPLFGVGIHGDIKMMYLTANYKFNGDHYVGVTVGRKLWQR
Ga0180437_1000257134	F006492	AGGA	MDAILEALASYGIAGIFLAVLVYYLNKLTDIHREERKDWQEANDRHVEKFSDVISENTKALIEMRGELKENKCKM
Ga0180437_1000257137	F045065	N/A	MTESQKLIGTRGCKLLTGTGAFTSLKGYSIIAQEDTVFTTFEVSGVDALADFGLTGATVKAGAYIVVPASDAITAITMSSGSVIIYNQ
Ga0180437_100025714	F079930	N/A	MAFDKLVDTLNGFRKAYTNALGKSIKDNNLVATGRLGTSVSLPKQPKVKVFGNIYQMQITMEDYGLDLDEGTRPQGKRPNNFTFADNYKDIYEWLKIPTVRDKIGGFKGDSDTAQWSESKHRGLAFVISRNLANYGMRPRNWIDPYTEPINRAVPSEIEEAIADDVALTMEQLKEFIESQ
Ga0180437_100025717	F085547	N/A	MIPLNRLEKELKEMTFPEQVRISKCEVVTNVPQMIDSHVKILRNNPGNRTFMPYYDRLLMLRFAVDTD