Scaffold Ga0180437_10002560

Overview

Basic Information

• Taxon OID: 3300017963
• Scaffold ID: Ga0180437_10002560
• Source Dataset Name: Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28723
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (18.18%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.3
  • Long. (^o): -115.8
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006015	Metagenome	383	N
F012450	Metagenome	280	N
F014008	Metagenome	266	N
F015085	Metagenome	257	N
F016624	Metagenome / Metatranscriptome	246	N
F019640	Metagenome	228	N
F021098	Metagenome / Metatranscriptome	220	N
F036150	Metagenome	170	N
F036153	Metagenome	170	N
F037709	Metagenome / Metatranscriptome	167	N
F054688	Metagenome	139	N
F068775	Metagenome	124	N
F071191	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0180437_1000256010	F016624	N/A	MENKMNKFMLVGGAVILAASLIFTAARNSEFDAGYEIYRTTASDTITDSEADTITISPYLYSFWKYNHTVKGVQESGTIDLTLTVQESNALSGDEWYTVATDSVDADGEITPMTGDVYGVRQRIIITGAGTQSAVYTHRITLKKPY
Ga0180437_1000256011	F037709	N/A	MADLVKVKFIKSPTGKFRMAYNAGHSGLVHKELADKLIKEGYAVLVDAPTKKVETKTSTEAELATTQAKKRTTRKTK
Ga0180437_1000256014	F071191	AGG	MGLYKRMLGSSNFRVGSYRSTSSRGSSSRYNNSQRSPIELSEADLRQFNADIVKLLKQVKDKKAIANIIYPASEIVRDRAKQLTPVAQPRKRQKGFRREFSPKRLRPDVLYFYKKEGARKAGKGKGKIRYKFGLGNIKSSIQVISKEKGYRTPIGIIGPMFTKLKSVVNPNDKRFNGWYAHMIFGGAKQFGEKVTYRALRDSKTLIFNQISAEVNKYLNRTKTNLRKVS
Ga0180437_1000256018	F014008	GGA	MVRFTKINNKEVPVSFGNATLIRFEEETGISILTLGQSPLNYKDSLKLIFEGLRDGHRKEKIEFKWTFEDMCDELDEDMDAITRIMNLFANSMPTEEKKTKTSRTKAHLTQTK
Ga0180437_1000256021	F054688	N/A	MPKKFESTFFSESGAEYIIEIHQSTFTGSATQFDTLGVQIKYDTGGDEDNRFKSVISSEASIDMHIDSSALNSFVEDLVTSYEDEYFLYIRTNQTTGQTVFKWVGYILTDLVSIEDVDLNLGYSFVLKAKDGLNTLKNIDYNDNGVPYTGKDSIFSHLLKVLLKLGSVNYAYASITEPLFSVVINWHSQEYTYNSNNTVLTKARIPHRAFYHIDTKGNYVYKNCYEVLEEICKTFGARIINSGSGFYITQINEYLNANSVIEKSYPLLGSLQTNTRDYSILHDQSDIDNSDLYRLTGSSFEFFAPLQYARVEYEHLATRNLLPGAIWDYNDETAKVAEDVASNNFDSILQLDFTLAFYTAFTQTVATTSFQDHYVVFRILIKLEGEVTNHYYQNQFIRQYNKFDEIGLQNAYWDTTEGYYYFLLPKVTDGNEILQNIQLIIPQVPADGDLSVKVEFYNVYGEYGINPLTAILQGGSVPVLEDYYTVTYEASNTFLQYIHTGFFSDQNDIIRFQSDNDNTAYKTYEVKTIIGDGPNLNSPGHLEVKNDSDEWVITENGWKVGNTGDAKNISQLLANESIKGQLLPVRKFMGTTMVMTDPDNAFLQPHYAINYNSAYWIFHGGTYDLYRDMVTGIWYQVKEDS
Ga0180437_1000256022	F019640	AGAAG	MPYTEQSLVYLSRDYRLVASYGAVGASSSAGGAVITDNDDTSIINPEIGHGVIFQEVLTASGSATFTVTENNGVLPENAAEITIYRNGLLLNQTYISSLDAINGQFTLSFTPDVGDRIAVVWFFRGELEDSGIYQQIFTPSGSSDTFTCTSNNGIIPSRKQEMLIYQNGIFIDSDKVTSYSQTTSEFTLNYTPSADDSIAAIWFMSLPNNLKIIQEQFIADGTQSTFTVTKNGGKLAKTKDAILLMRNGQHINNDYISGINTTNGTITMTFAPDQGDDITLIWFVEEFVTPTTNAVSMFQQEFTADGVSATFTVTENEGKLPEDLPSIMIYRNGQFISNQFISSHDPVAGTVTFSFVPRSGEKITIVWVVSNL
Ga0180437_1000256025	F006015	N/A	MKTDFTFKQALEIVMFILIALFAKGLKSQVPDSIYYEPFTFTTESTLGTSDSQAFIVYESKTLPNTGVMTFEAIDKIMDSTQVAEYAFNIIYRNENLNWLDAARLSKREKLQRLYAPVNTIIRDMQGYGFFAKTRMKFGDGFEGRWIARINGGDIIWLKVDRFTNVVETTMQGEVIEGGRTGKILIYTENRFKVQTLFNDVIDFREFFNKELDSDFFVIESQGNKVIMRKID
Ga0180437_1000256026	F012450	N/A	MKAIIDKLPNFDSVIKSSGFAVFVMFAMMSAMAYTLWNQYNRMNDRLTKLEREVIECYRENMLHNQGIIERNTKVMEEVLNNLNIK
Ga0180437_1000256027	F068775	N/A	MDKQELKSLVTAFGELITAAAKLDSDKDGKIELTEIFSFVQTLVMKVAAVYGSFPEAMKQFKDVKSAERKELIAAFADSFNLENNDAEEVIEEWLFVIDDIADAVVITKKYFAIK
Ga0180437_1000256029	F021098	N/A	MKTFEIKANEFSQRLVTVTTALTPAFLIISILLLALFNGFLEYLHYREIIGTWSAILPGVVFAILRFGSGLGGIKMIQNQEAPRGVFFVFVSIGLTSWATSHVSEIAQSIAINTEQVANAKWFVITALWVALLGELMIAAYMQSVQEKLDKELKLATIRKKPLKKTTTNTQPSVTGSNLNAIGFKTNSQQLVADLQRAKNNLAAYESKLRNGVGNPDSMQNGIERWKEKIRLIESALG
Ga0180437_1000256032	F036150	N/A	MDSNELSDIYKELQMKPRDVIQFLLSTGMDVPPHLQSEMIRHKNGKKKITKPWEAFYRSLYINLQNELNK
Ga0180437_1000256035	F036153	N/A	MTSKPSELLHLNQMRRKLRTYSNQDYIFINATNIHRYNAMYKIFKEITIKGIERTFGVHRSEWFNIDSAYQKPNLVIKSRKWFCFFMNYYFNVAIVVYAPDMGLTKSGVKHYISNLGEDKSLETRAEYNKILTNIFLTDAEIDTGIKSYEV
Ga0180437_100025606	F015085	N/A	MNNYKDLFSIYGEFDGKFYLETYQDHKEAYSRYSELSWKMLQRANKLWKKNPDLIPQFYETTKDGFDKSSHCRIGHIYIDRIPEEHEIN