NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187778_10787970

Scaffold Ga0187778_10787970


Overview

Basic Information
Taxon OID3300017961 Open in IMG/M
Scaffold IDGa0187778_10787970 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)648
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)3.8381Long. (o)-73.3194Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F102015Metagenome / Metatranscriptome102Y
F106053Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0187778_107879701F102015N/ASEDVRFADDDPEYATDAAAEIDVEAPAFEEEAPQNVPADMGDSGTAEPPAGDG
Ga0187778_107879702F106053N/AMPSASGLSRDQRIRCRDRVVQAARLTLANKDHTHYTEGPLRWDGIANRRNAEIGQFPQYSDCSSFATWCLWNGLVLRFGLGDLVNGAGWTAGYTGTMLEHGLPVRYPSNVLPGDCVIYGSGPPGVHCAVVVDMVNGTPMVISHGSEPGPFYLAYNYRPDVL

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