Scaffold Ga0187778_10152237

Overview

Basic Information

• Taxon OID: 3300017961
• Scaffold ID: Ga0187778_10152237
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1460
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Colombia: Department of Meta
• Coordinates
  • Lat. (^o): 3.8381
  • Long. (^o): -73.3194
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018762	Metagenome	233	Y
F054718	Metagenome	139	Y
F062641	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187778_101522371	F062641	AGGAGG	MDLGSISRFLAGLGGLWSRAEQYLPLILGIALPLAAVVFTFSMLQSFFQDSPAEDYFRIMGRFGITLVILGDYRNLFDQFNQLSSDLAHRFGDPNSFQAFFQQIQSQFTSLGGALAFA
Ga0187778_101522372	F018762	AGGA	MRQHSRKFVFLALTTALVLIVPITAHAFIGTMPVIDWTAVVRIGRQIGISQETLNTLGLYVQQYNRINAGVQEGVRLARGRQLRGILNQVVGSQFPQFQQLQRDFNGVLVDPSALRGDLELAYGATPSADFPIGRKKRIDAADATATLGLLEASRAELVSQQEELDADDIESRAGMASPGGAAKLSAAANGAMLRSQAYDQRLLARLMRLQALNIARENSIEKEQEQIREDQVTAVSDLAGSMKLSYGLGDFRRQ
Ga0187778_101522373	F054718	N/A	ICAQLGELSRLCEVLHLSEPAAEVVKELRNVPGHFAESYMLVGNQAESSAVIQLTATPFDYWASTSHPLETEFREKFAKEHPEFSALEVIYRLGMAHPKGLPSPSSKTRKEIYATAL