Scaffold Ga0187778_10002330

Overview

Basic Information

• Taxon OID: 3300017961
• Scaffold ID: Ga0187778_10002330
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12985
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Colombia: Department of Meta
• Coordinates
  • Lat. (^o): 3.8381
  • Long. (^o): -73.3194
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034385	Metagenome	175	Y
F055023	Metagenome	139	Y
F089292	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187778_1000233014	F055023	AGGAG	MKTEDELDAEIAKLFDEVTTTKVEMVNGKSRISDEATLAQMEREEEARRLEEACCLFLTREREFQKIAAHPDVVTNPRINCLWWDRLEAVYLAEKAVQKLFTGPQPTMADNRLWAKFRELLLKGSNLKANA
Ga0187778_1000233015	F089292	AGGAG	MLKWLLKSVLILIALALTSAILPVASFWLVRDPLGGQLFFWLSPWTCAVWAVLVSVLIGSRFWLGREYVLAWRAARGGFVMSSLKSTALMFLALLASYFFEFAVILLLPRSSTSLLLLPLAAYAPVAIAALWSVSGGTWTRTDRIVEGRRLADSMNEEPE
Ga0187778_1000233017	F034385	AGGAGG	MCEIGKPLEILDVEPLVLPAPLRKEEPATTEHPVTVEVPMSETTVEPVNITVEKL