NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187778_10000128

Scaffold Ga0187778_10000128


Overview

Basic Information
Taxon OID3300017961 Open in IMG/M
Scaffold IDGa0187778_10000128 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49289
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (61.40%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)3.8381Long. (o)-73.3194Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008059Metagenome / Metatranscriptome340Y
F010323Metagenome / Metatranscriptome305Y
F022331Metagenome / Metatranscriptome214Y
F026464Metagenome / Metatranscriptome197Y
F100174Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0187778_1000012821F100174N/AMDDPGDDNTHDVTIEAAPMSDDAAVRRLLGAAPPAVPAAAWVLEQTYDSEARLGKLYYISSEGVIVVSVSDVSEEQMRRIVDAQEPALQRAQGVISSALIVSIIEEALEEGPAGPATRARMH
Ga0187778_1000012831F010323GAGGMQPILPKFGNLAPEAQAARLLHCRYLGVVSVHRLATEMGLPVERAELLMCRRLATLIARGYPAEDLCETYHLTPEQLSRAATTPVFSNAFEPLAAGR
Ga0187778_1000012832F022331GGAGGMQLSSTELRTLVAAQIASGLVGHVALDSPQATIDGVAQLAVRIAKTLQELAIKSMHQKETPP
Ga0187778_1000012833F026464AGGAGGMDQRPTRQIPDDELVEIADQPQLWISKGGYVKTLRAGLVRAAHITGQGRSPFPLESPNGTRVELAQMSRLWNRLGIVQEKGSA
Ga0187778_100001287F008059AGGAMTLPRTGDLIRTAAERLAHEEYERAEKRRQELAEQRSDLNPPDVRIRMWEKVHQLRLPSDPTHPILDVIAVSTRLTLAEVLEEQRTRAARAASRI
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