Scaffold Ga0187778_10000011

Overview

Basic Information

• Taxon OID: 3300017961
• Scaffold ID: Ga0187778_10000011
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 100261
• Total Scaffold Genes: 95
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 79 (83.16%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Colombia: Department of Meta
• Coordinates
  • Lat. (^o): 3.8381
  • Long. (^o): -73.3194
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001811	Metagenome / Metatranscriptome	631	Y
F002291	Metagenome / Metatranscriptome	574	Y
F006031	Metagenome / Metatranscriptome	383	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187778_1000001114	F006031	GGAGG	MASRVINALGLRSSSDKTTVRTPIGDYRLEKAQQVGPGLPVYPAASLVLPGPEAARLAEVGIDQPQVVSSTYHTNASREFVLNWYLEHLSAEFARQDAGPKKLPEEFRNSHFADEDITFVGERGDQIRVVDLATDDGGTKIILLRSAKPPSPQSSSSK
Ga0187778_1000001157	F002291	AGGAG	MLWAGEDPALHAALLEQLQAAEIPFTDKTLGDDEVAPTADPLPIDWKPRFGFEVAVLSTDIPAAREILEKLLEEEPADLEIPARDEAKAEEPALVVSTEEHPAVEVWSGNDDRIAQFLTAAMQENEIPIHLEMLGEQTKFSVSAANEKRAKEIVREVVEGAPPE
Ga0187778_1000001163	F001811	AGGTGG	MSGFASSVLSCLEREKLEEELFEVRMRGRNLSRLRRLTAFERAALEEREQTARARLRDHEMEHGCER