Scaffold Ga0187778_10000003

Overview

Basic Information

• Taxon OID: 3300017961
• Scaffold ID: Ga0187778_10000003
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 120896
• Total Scaffold Genes: 108
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 87 (80.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Colombia: Department of Meta
• Coordinates
  • Lat. (^o): 3.8381
  • Long. (^o): -73.3194
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002063	Metagenome / Metatranscriptome	597	Y
F003528	Metagenome / Metatranscriptome	481	Y
F003702	Metagenome / Metatranscriptome	473	Y
F008148	Metagenome / Metatranscriptome	338	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187778_1000000329	F003528	AGGAGG	MAGRFSAALNTIYDILITDADGQHLQLESFKDLESAKRRFPSIAAQYPGTKIALWNRETRIILAETDGY
Ga0187778_1000000332	F003702	N/A	MKRHILTILMSFAASVISGAVFVVALFHQFAFVEIAASLLTGLQVFFLSSAIGDLLDEKKEPNRVRNSAVVLATAFLVAFYSVTRYFH
Ga0187778_1000000342	F002063	AGGAGG	MIAMLHFAILAIATILAGFVAAGMNWVCLRAACVLMQPATSRRITVRTELARGSAQLARAYASHR
Ga0187778_1000000365	F008148	GAG	MPVIAPQLTLQESATAQQETNQSLSIAEKNLAAVRGKKLNAAQSDMVSKISGFLKDAREAAQTGDWSRARSLAKKAEVLSNELIGSL