NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180429_10419102

Scaffold Ga0180429_10419102


Overview

Basic Information
Taxon OID3300017960 Open in IMG/M
Scaffold IDGa0180429_10419102 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_S_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)892
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.4166Long. (o)-115.9166Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051082Metagenome144Y
F063491Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0180429_104191022F051082AGAAGGMSVSEFTCIALGMLFNVLTFCLGVAVGVSVCQRRKESTDDRNRYEAEGFQYYDPSQN
Ga0180429_104191023F063491GGAGGMRTDNPEPAPAPLVLANMLAMHAWADHLDDHTRCLVEWAADTVRDLAKRNMQLAHDRDQAEGDAALLFQQLYGRQKGGAA

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