Scaffold Ga0180429_10044033

Overview

Basic Information

• Taxon OID: 3300017960
• Scaffold ID: Ga0180429_10044033
• Source Dataset Name: Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_S_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3105
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.4166
  • Long. (^o): -115.9166
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028966	Metagenome	190	N
F044811	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0180429_100440332	F028966	AGGTGG	MSAYAFVNYVRFKTQADAYTGTPYQNFSINEQRVYDGITYSFAPFAVSSGGGARGGDRSSASLVAGTDALSVNLFAEAVQNRYMLEIKTVSLDPLTFADEALVASEIWRVASYDMDTTRVVLRLTSPLDAVKAQVPRRTLSTALVGALPTSGALVVS
Ga0180429_100440333	F044811	GGTGG	MWRDWIGLPHQFRADPRNGHGADCLRMTWNVLEDAGVPHPPFDPIWFDLAENGRHRLLARAYEELTIPLDAPEEYAVTLFSTERTIGIGVVVDGGLLHVHHRRGVQWMPLDRCKPLEFRKFK