Scaffold Ga0180429_10035622

Overview

Basic Information

• Taxon OID: 3300017960
• Scaffold ID: Ga0180429_10035622
• Source Dataset Name: Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_S_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3504
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.4166
  • Long. (^o): -115.9166
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008401	Metagenome	334	Y
F060451	Metagenome	133	Y
F097164	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180429_100356221	F008401	N/A	MESQKLLTIAQTAELLNCSAGFVRKRISLTESRQPGGWPKSTYVNLQPNGAKSLFRINKEALQEYLKGQEEQAKVEKSVEPCATGTCSF
Ga0180429_100356223	F060451	N/A	MNGSEFVSISLTLEDEFTLTRIKNSAHELKGKEREKYLWDRIVRLVCRERTFKFVIDELGVVVDPNIDIFDDLNEE
Ga0180429_100356227	F097164	N/A	VSPPELVATTTAFLGGEIFLDPASSEHANAIVQATRYFDWKNNGLNQEWKGKNIYLYPPRDISIKSEQPTSTRLFEKSKYFKKSNQRIWLELAYAKWLRKEFDEGIVFITSTEVALLVTQKAGIDLPICILKDHPKLLIDDKTLKPLKQSRVFGFIFYLPSVTDYQRRIHDFRQQYSDLGRVYF