Scaffold Ga0187779

Basic Information
Taxon OID	3300017959 Open in IMG/M
Scaffold ID	Ga0187779_10002009 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300017959 Open in IMG/M

Scaffold ID

Ga0187779_10002009 Open in IMG/M

Source Dataset Name

Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12635
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (85.71%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

12635

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (85.71%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Colombia: Department of Meta
Coordinates	Lat. (^o)	3.8381	Long. (^o)	-73.3194	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Colombia: Department of Meta

Coordinates

Lat. (^o)

3.8381

Long. (^o)

-73.3194

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F026047	Metagenome / Metatranscriptome	199	Y
F035236	Metagenome	172	Y
F045207	Metagenome / Metatranscriptome	153	Y
F059117	Metagenome	134	Y
F066913	Metagenome	126	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0187779_1000200911	F059117	GGAGG	MKATTSRFVAIWASHEARARVWFRLFLVAMAALLLSLITTIRVWHRPREVVRIGCNGIPQVVALDNQAYSEPNEREIRAFATEFAIFYARSDSFSILNDLVWCANRMAPDLRERFKRAVRGSAERPGLIPVIEKLQRRTQVDSATLTVEVDKRPYPWKVHVKGVRQRVGDNGPGETFDLDLDLVRASRDEHIEGLLVWGIRAKGEPIETVLASVGAEGGRIP
Ga0187779_1000200913	F035236	N/A	MNLLLGLPFLALVWGLLIPILLLDGGKAYLGFLWKNPPWVVWLATNLGVLSYWLARRLSQALLLRGSGAKLRATDESP
Ga0187779_100020094	F026047	AGTAGG	MNRRQSECFRNLDDPLRIFSLLTVKSCGLVILFWGVAVATELLFGVWSLFFGGWSFLGQLGATLLFAGCLVYAERHDDEHLVPSAIRYYLSRRWRVLYSGGRPDEFHGHPLESIRGGPWR
Ga0187779_100020097	F066913	GGAGG	MKRRYLAALAILLLLVGPSTSFADAGSWAHLAAIVAWLQQIDATLRQVNDDVAGIKTVIDDMYPQDVLRQIEIVLEPVNSIKQELEKLACNWRFTPRVERLRLALFQGGIFCRREWNSLYGAPTLTVDWDLEHYYDYSSVRRMNMIKTRNDKGPERVAEAEWLAFEAQKGRDPLNATDPYSPGYSQRLSAMAAAELGNVMVETGDTQTAMLELDQEALNDKRHKRLLANEAAALVYLDMARRGQDPIILPTDGKQP
Ga0187779_100020099	F045207	GGAG	MSRELALPAVLVLAVLSSGCAADVLGRMKGFDVMQIVQSQPVTEAVLKARDVGRLLAGIEALILAFVCWYRIHIGVPWLAITKDWFLGIFVCAYILAAAGTAAGLEHWIWNVGVYLGQQFNPGQGFLMENYDKAVGQHGALILWLQQNTPLLSDDQRRLVEAIGWQLSSPYMAGVVALNAIGIYLMKMIMQVSYAWLISFYWMLTPMVAPMVILPQTRSVFLGWLKTYISVALWPMLFAFAERLALAIPWSAWIGAADNATDAWQAGVSIAQGELMLLIFNVTFFFVYLSIPIASYLFVSGASRPFRTL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187779_10002009

Overview

Ecosystem & Geography

Associated Families

Sequences