Scaffold Ga0187779_10000005

Overview

Basic Information

• Taxon OID: 3300017959
• Scaffold ID: Ga0187779_10000005
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 187348
• Total Scaffold Genes: 170
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 137 (80.59%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Colombia: Department of Meta
• Coordinates
  • Lat. (^o): 3.8381
  • Long. (^o): -73.3194
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009646	Metagenome / Metatranscriptome	315	Y
F099608	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187779_1000000524	F009646	N/A	MSKISRILLTGAAGLLSFQAFSSSTRAQRQSQAEAEKLTWHTLEFAIVRFNENAPNSWNIYHSEKKGVFLVRLWKRYLLVNVQDEEVYDIDPQKIKVTGDSAEWSYADLPDKPIETPDFVERNVGNMERIRFRLGKDGHFLELQIPLGPNGRPIY
Ga0187779_1000000546	F099608	AGGAG	MRRQVIVLAAMVLSATFVSADQKPAQATIISQTSVDCGTKKHGKKESTNILCQQYTVRTTTTEYQIRQQKPGDMNIIPPNTPIEFTLSKDKMKFKANGKKYEFLVVGTSAISNPPAASNPAP