NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181582_10110716

Scaffold Ga0181582_10110716


Overview

Basic Information
Taxon OID3300017958 Open in IMG/M
Scaffold IDGa0181582_10110716 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1966
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F073430Metagenome120Y
F104910Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0181582_101107161F073430AGGAGMTQFNKSDIERALQTPESVSRAIEILGNNQREDELSARSTREQNGIGFTSCWASAGTHLWQFVTGYDARSKTNKWGRKCLSHPNWQRAKIIRRKVHNNGCQDAVELGRKIALHHWRQLGALLAVQPPVPQAQTPVPQEPQVDLEMIAIPADKVDMAIAILKAAGIL
Ga0181582_101107162F104910GGAGMSSSSVITRQTTLAQLIELGLIKASQIDTFNKRLERKASKAQDSKLQERANQAVACYIGSQYGYGYENRFRKKPIEKALLKEGISRSMIDKAIAVMVEQGALVNNADQVNNQCHTRHWRPEPETNENDES

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