NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181582_10037527

Scaffold Ga0181582_10037527


Overview

Basic Information
Taxon OID3300017958 Open in IMG/M
Scaffold IDGa0181582_10037527 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3745
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025385Metagenome202Y
F064107Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0181582_100375273F025385AGGAGMKNRKYNDDLAVIEAFMDQRSAKSISMKTDGQSLFSFDTRIAEHVPDGYGRAATLVYDYTYGGDAYISPTTSNHVRLAKKQVPRQNWTSVFDARDAGLVPNTLPEVNNAKTSSNS
Ga0181582_100375278F064107GGAGMSNQIKLTIDLSDELVDKLLTIMALSSQQNALRGAMPMLMGMGGGMPTKEPKAKEKPSMGFSMENPNDNKETEEEE

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