Scaffold Ga0181582

Basic Information
Taxon OID	3300017958 Open in IMG/M
Scaffold ID	Ga0181582_10005468 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405AT metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405AT metaG (megahit assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10256
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (78.57%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

10256

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (78.57%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.972

Long. (^o)

-81.028

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023961	Metagenome / Metatranscriptome	208	Y
F037431	Metagenome / Metatranscriptome	168	Y
F094092	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181582_100054682	F094092	GAG	MGKKERNIGTMLKPLDSHKPADSVTFIPHERPDILRRLKEIKFDTADRLSANYMDLDWFGFEAISVYERNGKIVGFSSVAHREEYFDKDEARILNRYYESPDMRRTSKIIGDDHVCEMVAQQIDIAKKLGYKKVFISRSRSPRHLEMFIENVGIKTKTTWHMEDKKIAVCNPKNPECWQFKVWTEI
Ga0181582_100054686	F023961	GGAGG	MPNFIQTDHTPDVGLLRAYMKDAWEDSNELYKEYMSWENNKFFVQEIKDFDRPLLREIKKIWNHIGIRPREWRCNFFRVLPGGELPLHVDVLSKCSVVIPMTEMTGELYFEDGTEVLYQNMTVINTKVAHGVKSPTKERIVFHMGIHDVPFEEIKIGHNS
Ga0181582_100054688	F037431	AGGA	MPRYKTDRPFTEDQLSAMDVIHDPDTKMFNDQYEESYVVEDFIDDLECIKIAHFFQKNFDSIGYNINDHVYHITHPMAVPDISKIMKDKIYDHFGSDVIFYSDVNDDPMSVGDQLFKSTRPYGLHTDAVTHINGYRPYKDIIVPVELDGIDETQYVTFNQRYRGRATHFMRGRTKGSFANYANVIRHQSYEKYGVEGIDYSERDHHILEKLMPDHIPMSIYEGLSIEKVLPWRPKCAIVHDASVLHAPADYRKHGCEYKIGLTLHLMKRDPDYNNRLEGYYTPFSRYTKPLIPA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181582_10005468

Overview

Ecosystem & Geography

Associated Families

Sequences