Scaffold Ga0181571_10408400

Overview

Basic Information

• Taxon OID: 3300017957
• Scaffold ID: Ga0181571_10408400
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 840
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-2 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035551	Metagenome / Metatranscriptome	172	Y
F090246	Metagenome	108	Y
F092867	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181571_104084001	F092867	N/A	VHGKECLAYRTNKDNKVIDHDTFAAMSKEQKKEQDFGHCGDCRACWSKDVPNISYPLH
Ga0181571_104084002	F090246	AGGAG	MRSFYIYQGFDRGQALDIVYSMREAKQQAIKLSKQLGTITVRDALGGLRLEVNPNAPEQHQIKTTK
Ga0181571_104084003	F035551	AGGAG	MNLRELTQALDNGLDVRWGNDGYTVQWETLPNGKAITIRFTANGFGGAMACSEIKDCYIKSEE