NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181571_10056936

Scaffold Ga0181571_10056936


Overview

Basic Information
Taxon OID3300017957 Open in IMG/M
Scaffold IDGa0181571_10056936 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2708
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067627Metagenome / Metatranscriptome125Y
F071123Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0181571_100569361F067627N/AMINTLLKVLSKQQFGFVTKEDLDALEVEMPNLPLLIRCGCDRYIAQAQDTKARMDYVDETGDYVRDISIPSKILDQMSTSPFVCFEVKQAIEGLRAF
Ga0181571_100569366F071123N/ANDDEISKYLDYWMDNDPFFSQTLGNNNNIVEDVEHYSDRGIPRTAVSLNENLVLLFPPYQTGFDYSQIDYAPK

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