Scaffold Ga0181571_10026526

Overview

Basic Information

• Taxon OID: 3300017957
• Scaffold ID: Ga0181571_10026526
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4166
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022603	Metagenome / Metatranscriptome	213	Y
F068249	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181571_1002652610	F022603	AGGAG	MQVHVLQLQGTGDDEYAWENAAVCANYEDAIERLAEINAEYTDADDFVFTLDDNARIETHDVVDNNWGL
Ga0181571_1002652611	F068249	AGGAG	MKYTGTNSTLLAFEASNYDFNVKHNCGGDEAQCYNLTDAQKETLFKVVDKYKFIEGNYEATMIQGVGHAYCDSGIISDAWAVEDVQILSEYLRDTVASTVNKKNKYGIVDETSVFYETEIVHTVGDSIINMHTDGKRTHMWHNLFIADMEEALNIDDIETWASYAWDLESYMYENK