Scaffold Ga0181571_10016820

Overview

Basic Information

• Taxon OID: 3300017957
• Scaffold ID: Ga0181571_10016820
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5343
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.88%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008453	Metagenome	333	Y
F009699	Metagenome / Metatranscriptome	314	Y
F018534	Metagenome / Metatranscriptome	234	Y
F032639	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181571_100168201	F018534	N/A	MALPTLTDFLNSWEKLIVTGMTPERNDSVMTTTTNNIPVAIEYRHQINSSTGECSTIAYLVAYDEEGNRVTLRNQTYGCFGDEEKQFHQWFAKKMGKACGLDVSRRLDVSRAVDDFLE
Ga0181571_1001682012	F008453	N/A	MSNYAVYRVFRDWNKRPKVLMDGLTREQAQTIVRNTPSKEDSMVVFDEEPRSKQWGRR
Ga0181571_100168207	F009699	N/A	MMTDKEAQAFMQKVDATAPFWVELTAEDRPTIKIQGRDVPRCLYNLMITRRDVNLYLHGLKPHRGWKIGDVKAYFGLKGGKQKVADAINAMHDEFMGRFKEQNDARQEQETD
Ga0181571_100168208	F032639	N/A	MLDKNKKLINEDGLYVGSELMWCVDDVLRILDEMHMTASKEDVERILIASFQDNHMLMQQINEAIGDTITYMIEEGQLKTEEL