Scaffold Ga0181580_10253516

Overview

Basic Information

• Taxon OID: 3300017956
• Scaffold ID: Ga0181580_10253516
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1214
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012087	Metagenome	284	Y
F016344	Metagenome / Metatranscriptome	248	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181580_102535162	F012087	GAGG	MTDIELDEIRSDLKEIKEMMQIISKQVAADQEVAAVRTLRKLEESRISKQIREMSHLAD
Ga0181580_102535164	F016344	GGA	MDHCQVEDPTDEKTMTHAEKMNARFEAFKEETRRMNRSYWASVRRADQQVQEIRQSYTPVYECPVCGLFRPADHTKDCRDLRPVDPSMKEKIHWRDHGTDWNWDYQATIE