Scaffold Ga0181580_10109126

Overview

Basic Information

• Taxon OID: 3300017956
• Scaffold ID: Ga0181580_10109126
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2018
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005819	Metagenome / Metatranscriptome	389	Y
F016157	Metagenome / Metatranscriptome	249	Y
F022317	Metagenome / Metatranscriptome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181580_101091262	F016157	N/A	MTENNGNSYTQKEMTAKIMLDIEKIFNKLDELQKDINTRPTRQEIYGWIIAGISIATLITILM
Ga0181580_101091263	F022317	AGGAG	VATIKIDTKTIVPIIATIILSAFGWVFNSIEEIKSHQNACDAMVMEINSELDMLESNFTELLFKLNG
Ga0181580_101091264	F005819	N/A	MDYIDDMSLALPNQQQVGESNIDFKRFQYYLGLGASRTLKKVSQNFSLSDRRIYQIAAKNRWTDRVKAINKMLNEQIISEVFAQVGETARDLADNLKPLIFRIINEINERDLASMNPTELKGILDICYKIISQIYGLGQPQVTVNHIEQPQIRFKWDWEQDDEPDY