Scaffold Ga0181580

Basic Information
Taxon OID	3300017956 Open in IMG/M
Scaffold ID	Ga0181580_10097862 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2151
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2151

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.972

Long. (^o)

-81.028

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011403	Metagenome / Metatranscriptome	291	Y
F011589	Metagenome / Metatranscriptome	289	Y
F067803	Metagenome / Metatranscriptome	125	Y
F070193	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181580_100978622	F070193	N/A	MVATVRNGFAQVKSNFIRAIATSNVIGAAAGISASLDQFSTSVANLRGQNAPTDGAGFYIAVVTPAQELALAKELNGVGGISSGSIGSVAQDLANQALLEGLIGQAIGCRFVRSNNLPRDLLTA
Ga0181580_100978623	F011589	GAG	MAFILSGTNVISYAEALDVKDKDQRLFESNELDFTNVPDAPGSLNNYLEDLTTKATNRINQKIRASARWREYLGYAGSGYDSIDNIPAFNPNLIKSRKADFTDMCCYYTLKEYLLPKVADFGNPESSEVQKIQYYDDKFNELFAELLNMFDWYDSDNDGTVEEGEKMVRFSLTRRTRGRRATTRVR
Ga0181580_100978624	F067803	AGG	MAVRDTLKANLDVALASTSVGVSAELPFSSAGEPLYVKNMKFVYLDEDNISKEELFNTLDNNDIAQTTTTVTGYLAVDAKTQPTDIDTVVSAIINSRQAVSGQSTRECAMSTDIEADVLIYTFNFNFITI
Ga0181580_100978625	F011403	AGGAG	MAIINVSAGDEAVLSIGDSAANANVSAGAGLTVPYIQDITVNNSTGVFRWKTLDNTAENAVTTPATNQLSLNLVVDTDAFFGSSNADLVVNDGIYGCSTNKRRVYFRVHFDGTDTGSKFISGSGFISGLAPTTNMDAPVWVTPVTIEVDGDYSTVGTI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181580_10097862

Overview

Ecosystem & Geography

Associated Families

Sequences