NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181580_10053982

Scaffold Ga0181580_10053982


Overview

Basic Information
Taxon OID3300017956 Open in IMG/M
Scaffold IDGa0181580_10053982 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3034
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002495Metagenome / Metatranscriptome554Y
F003365Metagenome / Metatranscriptome491Y
F005537Metagenome / Metatranscriptome397Y
F008307Metagenome / Metatranscriptome335Y
F043149Metagenome / Metatranscriptome157N

Sequences

Protein IDFamilyRBSSequence
Ga0181580_1005398210F003365N/AMKTIGKEWTKKEEGGMFTADHLSPSQLNKNVDQWFNDYCVLTAEQRKALVGNLKMDFGGFVGQALQDMIVYNLTVDEVMEGKK
Ga0181580_100539822F043149GGAGMALSNSNVRLYAKLDKAHKKIMGAKEKGRQCVHTLNNFKEYNQLFRRIVEAENKDARFLY
Ga0181580_100539823F008307AGCAGMVKVVKKSDIEIAAEFEEIFDGATVEEATEKAHNQKMPSESAKFIITDTRFTKANIKLIGGGENDGTK
Ga0181580_100539825F005537N/AMSLLIFAKINKEIMSDNVKFISELERLLNEKQSDYGHFDNTSFVMAGIMEKYLSVYNNKDIKVPLKFFGIFMVFLKLWRVMQSDSYKKDSFDDINGYAELLRRLVINDENSKR
Ga0181580_100539827F002495AGGAGGMSTNGNAKQKDWVLFPYKADDERAVKISFSGNVILDNEKKGTILGVKGVSKDGKSKFVRIFAQVGVVFKGDDKFTGEMNYPDAGGLKGLIGWLNDEGTILSGYKNEPRPKEGKAQSKEIP
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