Scaffold Ga0181580_10036428

Overview

Basic Information

• Taxon OID: 3300017956
• Scaffold ID: Ga0181580_10036428
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3781
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002249	Metagenome	578	Y
F004650	Metagenome	429	Y
F012285	Metagenome	282	Y
F013522	Metagenome	270	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181580_1003642810	F004650	N/A	MVYRLNSIKAELDGDTIQYDNGESIWLVSYLAQYDWDNPAPNSTEDAFKIGKVVREYGITTEEIEEERRLMNG
Ga0181580_100364284	F012285	GGAG	MYHNDSKSFLLFGQQMNQIIAILQMVSDKNPDIQKLNDFIQYLKDMVPYEDMLDSFVFGDQETMPDEVRPVGSKDAMTLEEMMDDLQLRFLDARDKDNGKN
Ga0181580_100364287	F013522	GGA	MKKENILKRIEKLSKLCEETEPTFNEMMNMDKLFTQDLISVDNMYLQVEQDEYSPQDLIDIMKECNWIWKKRNKIKEVGWDKYNNIDRKIEEAVRAGRKIEAIKTYRKHKIDNGEDCGLKEAKVYIDKVSIKLGLD
Ga0181580_100364288	F002249	N/A	MRYGKRYKSFPYTVPINHKALQHTKIKELQVRMMKWISWYKDEKIRNRTVDKDKWQHRFQFTLRCQERTGKLTKGELQQLNHYWKVYEEGKHT