Scaffold Ga0181580_10007124

Overview

Basic Information

• Taxon OID: 3300017956
• Scaffold ID: Ga0181580_10007124
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9033
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001222	Metagenome / Metatranscriptome	743	Y
F003188	Metagenome / Metatranscriptome	502	Y
F020020	Metagenome / Metatranscriptome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181580_100071243	F003188	N/A	MTPPIKKIREVLYHLHPISYRIRNKGVDKKTMDKMLFIEIVEALRKIEDRRDFMAEEIGMDMTTYEDQFFNVIENLMKMTFNKQQLGLIQMYLYQLLPDKEWDGKITVEVGAKQERVVNFKTPTDVWNVISQFNDKP
Ga0181580_100071244	F001222	GGA	MKQLETYAKQLIREAAKINFAGHSFVLKVDTNEDPQKKGVKIQFLPTEFGSITPTEQNDIAIELESRLEKGLAEFDMRVERDRNLKDKTIIGFFIYIEYFDRIVRKALKGQNPDVGDSADEPSEV
Ga0181580_100071245	F020020	AGGAG	LILEILFLSLFKLTTMKTYLVEFTLSDGTKEEVKLTTDRLEWSIQQWGRNRNVIDHKIISEGSNNSKQMIFG