Scaffold Ga0187817_10065516

Overview

Basic Information

• Taxon OID: 3300017955
• Scaffold ID: Ga0187817_10065516
• Source Dataset Name: Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2254
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 35.9061
  • Long. (^o): -76.1569
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F006278	Metagenome / Metatranscriptome	377	Y
F029198	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187817_100655162	F029198	GAGG	MDSKPNSRAVRVDGEVIVLHCWACGTAHCVNLELCLPGELSLMVCSNSNCRMSMFLVNELAVDDKATKQMTKSELNARATYSRFWK
Ga0187817_100655164	F006278	GAGG	MFRAEIQWLASGPTLKLEGKLVADWAEQARCLVTKDVLPKDLIVDLTDVSYVDSVGEQLLKWLASVGVVFVAGSVYAFAVCDRLRLPPMQRTAERRKRRDGSSGATSSIKHSHPVEAIQG
Ga0187817_100655165	F001596	GGA	MSWFQSSTAPVDARNHASPAEVVACFQHQRNVLGRLAFLITGDQTTADQAVVQACEITLQGNSPFRDWLLEWAKVATIASAISHGTEAIRICEAAYKDRRCPHVEHLSQGDAEERAASLDLILGTDAQTLIAELDLLCRAVLVLRVAIRSSIQDCALRLNVSRAAVLAANCHALIWLQKREVKPVAEDHDASHAV