NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181583_10427749

Scaffold Ga0181583_10427749


Overview

Basic Information
Taxon OID3300017952 Open in IMG/M
Scaffold IDGa0181583_10427749 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)820
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040577Metagenome / Metatranscriptome161Y
F048887Metagenome147Y
F068602Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0181583_104277491F048887N/AMHIRREIDNLLDKMNQIIANKKDANKDCPELNKIFDEIRRKTDNGKRAKGMWTNSPEFMSIK
Ga0181583_104277492F068602GAGMDDNDPHADEMLEKSAFIVEALENNIHHYSDEQVAQLLLMQQSMEFYLKEDDTNKAIIECRNLYNYISEITQ
Ga0181583_104277493F040577N/AMTELQKISSEIVEIFQNKINKLTKQQAENLNMHNNSMNFYMQLGEEEKALWEARKTLQYLEQITK

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