Scaffold Ga0181583

Basic Information
Taxon OID	3300017952 Open in IMG/M
Scaffold ID	Ga0181583_10007017 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG (megahit assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8272
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (69.23%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

8272

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (69.23%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.972

Long. (^o)

-81.028

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016994	Metagenome / Metatranscriptome	243	N
F072869	Metagenome / Metatranscriptome	121	N
F073442	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181583_100070172	F072869	N/A	MPNHLDKAIDIILSGDSKLRDKTPRVYALPEKLPEGWGELKRMRYLDHDISAGRNIKRWLKRDYEARRLVLQEPPFEEAEDQSEIFTMIREPYQRWWSGIRDFMYFMPWYTWWKNERIMEQWPHFHRATFRIHDVMEQIKPQHLIKVDDGLNNRIINFARKHRLLCFGNIPHERHIRHSRKDIQKMERVGQEELQKWLKANPAWQKKLDDYLEPDLAYWDKVKGQD
Ga0181583_100070174	F016994	AGGAGG	MAISENNTTFVAANGNQLGKELEFLTVDAGEELANHTGKDGTLQAIEQTIMAYGNIVGAGPLFDTNASKTYIVEGTDMFVGAPASAGGSFTFTAQSEGGSASTLLAAIKALGTVDSIDLNDGGTTAVVNDLEM
Ga0181583_100070177	F073442	AGG	MQRNFILTDVMKTGDHLRLEQFINLHSLKDQTFDSTGEYYTLHDHDLDSYDRKFAVIDISSLPKQNVVSRNKEFVLELKRRCDLLHSQGFVFIKANPWESLENIQSTTQYPEIELEHVKWTGGVSWFWYYMYTKHKDKTFNFDHSNKKYDFLYLNKQVRAHRKKLYDKLFNNGILENSLHTSWPSRKLPAEYELPWAQDYPRYGMDQDIFEKPYNDTACSIVSETNDNDYEVFMTEKIWKPIIAQQLFVVHGNYLYLQKLRDMGFRTFNNYFEEVYDLDRDPDMRINTIVDLCDRLRDAPWQDIYLQTQSLRQHNYNIFFNKEKLSLEINKTLNLFLEFADRG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181583_10007017

Overview

Ecosystem & Geography

Associated Families

Sequences