NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181577_10882428

Scaffold Ga0181577_10882428


Overview

Basic Information
Taxon OID3300017951 Open in IMG/M
Scaffold IDGa0181577_10882428 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)535
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040951Metagenome / Metatranscriptome160Y
F044932Metagenome / Metatranscriptome153N

Sequences

Protein IDFamilyRBSSequence
Ga0181577_108824281F044932N/AHKYGFIKHPLNCDADNFVIEWSSYEDIKKYEGKIFTLELENNKGQKTQIKPYLNYVQNFTNIMQVGFFSDDQSHTTTSNAFDIFNNESDTVTISIGDEYENFDIKSDTFLTRGLKEARKKAAIKCRGLSSNFALKAV
Ga0181577_108824282F040951AGGMIISYEEPPKRKHFKSEEEYQKAFKEWKELFDAILEKHGN

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