Scaffold Ga0181577_10128704

Overview

Basic Information

• Taxon OID: 3300017951
• Scaffold ID: Ga0181577_10128704
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1734
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001166	Metagenome / Metatranscriptome	760	Y
F006847	Metagenome / Metatranscriptome	363	N
F034161	Metagenome / Metatranscriptome	175	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181577_101287041	F034161	N/A	TGAKPKLTQGAVAGSSTMPFRSMQELARAQADPRYRSGDKSYHEEIDRRLAISNI
Ga0181577_101287042	F001166	N/A	MIKDMAAEIGENVQVKANLAFMAKVIAIVGTAVWGYSVVWNKLMILDSSLDRVQHEGTLLGDLSARMMHIEKFAEQSKADLNHLLEMQDAPITSDHQQFERLRYLEKELDRLRIKMDNHLTKGQ
Ga0181577_101287043	F006847	AGGA	MGELLMLFITGGGSTAMGAILKGVFGYIFEARQQKHDIEMAREARANDNFLRLQAELAKAGTSEFVSYTRRCLAVIGVSTLCTCIILCTLYPNAEILTVTNADGEGYNEFLFGLFKWQAAQKPIIISSGHIALMGCTVILPCILGFYFGPSGRRG