Scaffold Ga0181577_10079364

Overview

Basic Information

• Taxon OID: 3300017951
• Scaffold ID: Ga0181577_10079364
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2294
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001873	Metagenome	623	Y
F002942	Metagenome	518	Y
F004131	Metagenome	451	Y
F013880	Metagenome	267	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181577_100793642	F004131	AGCAGG	MRAKRITVVADVSQFPFSEMRRQLITPLVREAAELLWPAERRRVTVLLRAPEFWDECTSADLEASEELADICFDLWVGAMT
Ga0181577_100793643	F002942	GGTGG	MSEEQFTAFCVLLAAVSVPSVSLLYVLAWELWSYSTREKHR
Ga0181577_100793645	F001873	GAGG	MKWWNIAAALAVLAGGANAEILMSQDFTGIDQPFWADATDGKGELIQWDLTDKNGGGAVWLNADGFHNNHLDREYIAHGYRYGMKRIPGAPVDDISEFITNDWIQHHRDGAVEFGGNDSRGMVEFYAERDISLQPGYLDITLRNDHEYAQWRVNGQLLYEHIAGESSLKTFRYDLPEGTEDLRFDFSGSGTADGVIERIEYHQYGTTVPEPSIGDLLDLIGNGVGGLIGW
Ga0181577_100793646	F013880	GGAGG	MARFIPESEHKNSLTWLYKKMEVGDEARVLRSRKMAYDLLRSAWYNKGRPEKMARGEEVPWLYLEPAVARVNGEVIEATMVVRVADEVECWAKRKKFLKEGVR