NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181577_10077302

Scaffold Ga0181577_10077302


Overview

Basic Information
Taxon OID3300017951 Open in IMG/M
Scaffold IDGa0181577_10077302 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2330
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018534Metagenome / Metatranscriptome234Y
F020115Metagenome / Metatranscriptome226Y
F025729Metagenome / Metatranscriptome200Y
F027834Metagenome / Metatranscriptome193Y
F048249Metagenome148N

Sequences

Protein IDFamilyRBSSequence
Ga0181577_100773021F020115N/AMMNNTMTYEQFEILRQWAERVANTANDTDTNIRSIDLVHDIAGILANDEHFLPRL
Ga0181577_100773022F025729N/AMDKAIIDRLVYCEETYAGETETWQDPVTGDYYHVPIEIVRDFDNAMNLNDPN
Ga0181577_100773023F018534N/AMALPTLTDFLNSWDKLTVTGSTPERHNSVMTLAPNGVKVTIEYRHQISRSSGECSTIAYLTALDENGERFNLRNQQYGCFGDEERQFHKWFAQKLATAYDLDARKRTELNRSVDEALSWY
Ga0181577_100773024F048249N/AMKTSIFNTRIIRKGSQVLYRGSWGRDAQKIAEVIAIEQTQGPNEKYGDEVDAVTLDDHYVLTLNNGHWCYSYQVDGLVQPIENQSVAK
Ga0181577_100773027F027834N/AMQNFSFDEAMCFAYGSTMLTGGSSIGVMDNGEHYVPKYGYVVGGIVPEKSIKMDNEAHFKHTYNRFYYQAGLALERESAVVIGTWVEHRESGDYIVFDLCNVLDDMKSALELGAKRGERAIYDLENEREIFINHK
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