Scaffold Ga0181577_10071501

Overview

Basic Information

• Taxon OID: 3300017951
• Scaffold ID: Ga0181577_10071501
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2436
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Aequorivita → unclassified Aequorivita → Aequorivita sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011489	Metagenome	290	N
F019313	Metagenome	230	N
F022880	Metagenome	212	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181577_100715013	F011489	N/A	MKSKHKEDWNNFLRRNYSKLRTIGKRWTPDSSDLVHHVYLRCIDKDYPENPLGYFVKAMYNEATRGKFKDLYFISDNEPKEQRSENDWAKAIQREQMQLLLDRLSWFDRTVFSLYLQGWNMADVSRRSGIGESTLYRSLHVTRKILKDVLRNRTEKE
Ga0181577_100715014	F022880	N/A	MFFVTGQKRNDRLAVCQACEHFVESTKSCGPLVTEAFTDSKLCGCHMPTKTRLKVSSCPLGKWEAEIKENDLEEIRNLLDNPHKATNGDLARLYSKATGTNTRPSQCGSCNQRMFNELKALINATPEA
Ga0181577_100715015	F019313	N/A	MSYTKEEREEIARNIREYMKQPKKEKFEEVSYAGMKVLHRRDHNMTWYDREWLETIARDVEGKIIHG