Scaffold Ga0181577_10054049

Overview

Basic Information

• Taxon OID: 3300017951
• Scaffold ID: Ga0181577_10054049
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2853
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008453	Metagenome	333	Y
F016269	Metagenome / Metatranscriptome	248	Y
F017473	Metagenome	240	Y
F025275	Metagenome	202	Y
F070055	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181577_100540492	F025275	N/A	MKYYALLHGVCGLAEGYSDTTVRWFNDLDEAKTAKQKSLAGLMMAAHEEIQSTTDGMQDIIIFSDDEGESEILKIVELKPTFPENVSIREFFVWDQMDCEAPYDGDYLPTDMAVIKDLCERQQAVADTFDVETFHEFVNDLWYGGTAMFDADDLCVYYFRVPKPNQFTS
Ga0181577_100540493	F016269	N/A	MNVNDFIFLCEEYNIDPVIASEDEGVRKILKTPTSSVNQQLMLSGYLHKNF
Ga0181577_100540494	F017473	N/A	MNGKRKQEHIRNIAFCIKTGASGYVTDNFRIDDLPTPQRAGTLTQQDAYARGKAHIIFEEFLKQNPDINE
Ga0181577_100540495	F008453	N/A	MSKYANNYAVYRIFRDWNKRPKVLMDGLTREQAQTIVQNTPSEEDSMVVFDEEPRSKQWGRR
Ga0181577_100540497	F070055	GGA	MKTKYSHPDEHLIHDDCRVEIEPVYKAFGQTDGMNILVLENDTDEVVLEEWEPDFEWAWETAKYYSKKYNLEITDNLPY