Scaffold Ga0181577_10046432

Overview

Basic Information

• Taxon OID: 3300017951
• Scaffold ID: Ga0181577_10046432
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3103
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000589	Metagenome	1006	Y
F001650	Metagenome	657	Y
F087058	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181577_100464322	F087058	N/A	MKVKEKDYEDIYWCIVTDQVPAEIINEYFEDKNFYRYYVIRRGQDDK
Ga0181577_100464323	F000589	N/A	MAHSKHIKGDRAELIAAEYYISLGYSVHRNMSGHGPVDLVLIEPDSMGEVILVDVKALSLRTKNGWKVNRAPTKKQKELNVQLIFVDLDTREIHQSMPRKQNKKIKNVVDIKEYMRTHAP
Ga0181577_100464329	F001650	AGGAG	MAKTLIILVLLFDGTLVQERYELGREMPVSECLQYGDDHREAIAEYKEFKDSLKNGWYLKDGRGTIQGHMCE