Scaffold Ga0181577_10038172

Overview

Basic Information

• Taxon OID: 3300017951
• Scaffold ID: Ga0181577_10038172
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3457
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002594	Metagenome / Metatranscriptome	545	Y
F019311	Metagenome	230	Y
F066824	Metagenome / Metatranscriptome	126	N
F084306	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181577_100381724	F002594	GGA	MAKIPTSRLNSAPKEYNEVDFDQLIEDLQDMIKILNSTYPKDIQDDQDRKQWFFMRGN
Ga0181577_100381725	F084306	GGAGG	MSHLEQKLSQKRNLEAQWASKFIANGAVTVEMVQIQKKINEVAQEIKEDSEKKD
Ga0181577_100381726	F066824	N/A	MLVHFKFYRCGYFAEGLVKHDNLDSASQALWKEHPKTFRWSDIQGPEDENRLTVEEWNEPSGTKTEPEAEPRGTMGL
Ga0181577_100381728	F019311	N/A	MTFVFKHPSKYRKEKMTKYVHIKDCVVGKKYRFEKHEHTIMDYDYNYSYMTGTCVTNHIYKDRDKVFDEYEHLIEIKLDFPRKELEGEYDNKLMFFFPHDNNLYNDVKVVEYK