Scaffold Ga0181577_10032406

Overview

Basic Information

• Taxon OID: 3300017951
• Scaffold ID: Ga0181577_10032406
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3776
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047058	Metagenome / Metatranscriptome	150	Y
F047679	Metagenome	149	N
F055653	Metagenome	138	Y
F082690	Metagenome	113	N
F103249	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181577_1003240611	F055653	N/A	MIKDIFNPKFNIANVPFNERVDCLNQLIDARDNGFITPNESIDIAAVQWYDQCQIAKLKR
Ga0181577_1003240612	F047058	N/A	MMEKKIDTAFECVECGNTDGDTLMILRDAPHVVECCKCGHPNDARWDHDECDVF
Ga0181577_100324064	F082690	N/A	MSKECVMCGGDAGEYGNNPAPLFDEGVCCDDCNMEVVMTRVMINRVGRNMKQ
Ga0181577_100324065	F047679	GGA	MTNLETSTAPIVADQEGDHYFMVGETVYYLNEFVKTLGNRDFDGVAHITNQGGIGIKIDEANEEVEYTIFTASY
Ga0181577_100324067	F103249	AGG	MKSFYHVLDYLQSSDPMKWQALFVGMDVNEECLRGMREWLGAEWYEKVLLEDEYPEFAFMEDDGVILDMQHEMLATLN