Scaffold Ga0181577_10017302

Overview

Basic Information

• Taxon OID: 3300017951
• Scaffold ID: Ga0181577_10017302
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5307
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008453	Metagenome	333	Y
F009699	Metagenome / Metatranscriptome	314	Y
F016269	Metagenome / Metatranscriptome	248	Y
F017473	Metagenome	240	Y
F025275	Metagenome	202	Y
F029600	Metagenome	188	Y
F032639	Metagenome / Metatranscriptome	179	Y
F084107	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181577_1001730211	F017473	N/A	MTTQRKEEHIRNIAFCIKTGASGYVTDNFRIDDLPTPQTAGTLSQQDAYARGKARIIFDAFIKQNPNINE
Ga0181577_1001730212	F016269	N/A	MSVNDFMFICEEYNIDPVIASEDEGVRKILKTPTSDVNQQLMLSGYLHKHF
Ga0181577_1001730213	F025275	N/A	MKYYALLHGVCGLAEGYSDTTVRWFNDLDKALESKGKLVAILMDDDNAESCTTSTDGTESVITFDIDEREQEIVKIIELKPSFAENVSIREYFVWDQMNCEAPYDGDYLPTDMAVIKDLCERQEAVADTFNIETFHEFVNDIWYGGIAMFDADDLCVYYFQVPKPNQFTS
Ga0181577_1001730214	F029600	N/A	MKYWNGEGQYQDLFDKHWRNLVPVVGEADTPEGNVIRAIARVNHDVFNNGACNIVRQTEEMDDDGEYYTEYSIEPWWEDFFEEISDFARLDADRLKRKIIEYVQYDKDYGLSDLLDDYIDHIILKVDNQLVTK
Ga0181577_1001730215	F032639	N/A	MKKLINEDGFYTGSELKWGMDDVRNVLERFGRATTTSKEDVERILIAAFQDNYRLMETIDEAIGDTIVYMIEEGQLNTDEQ
Ga0181577_1001730217	F009699	N/A	MMTDKEAQAFMQKVDSSAQFWQELHSEDRPTIKIQGRDVPRCLYNLMVTRRDVNLYLHGLKPHRGWKIGDVKAYFGLKGGKQKVADAINTMHSEFMGRFNEQNNDE
Ga0181577_1001730218	F084107	N/A	MNEDLKLQISMAFSDTGAYWELIHILSKQNNILNRDEIDELVDRLEAFIVQEVDEIIDER
Ga0181577_100173029	F008453	N/A	MTNYAVYRVFRDWNKRPRVLMENLTREQAQNIVRNTPSEEDSMVVFDKMK