Scaffold Ga0181577_10009110

Overview

Basic Information

• Taxon OID: 3300017951
• Scaffold ID: Ga0181577_10009110
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7470
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037491	Metagenome	168	Y
F062713	Metagenome	130	Y
F070058	Metagenome	123	Y
F100034	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181577_1000911010	F070058	GAGG	MIGTNFIVQKFDRNVWEWVERSPDGCDHYSSLDHAKYFCDSYIKDGEECRVIREEVVYDPDRKPK
Ga0181577_100091102	F062713	N/A	VVCGGSRHAMSYKLTGVNIMMIQYFDDRADREWLGIVPEFFARGVVAARFEGGGISTVSDEMNAMYGMGGFSDHWRGDIDDDGVYRAPEDEPLEPFARVDFNGWTMWAYPYSIFGIKDSVGNQRVGRFD
Ga0181577_100091107	F037491	AGGAGG	MHFTENRVAQYFIDTVLRDPDKSISVFGEGEGPDVKKSREHMTVLDNMGQCDYDDVGVWSDERDGYVAWFQFVYGNVTSTSEPMEVISNYSANEYADRIINNVEWCTE
Ga0181577_100091108	F100034	GGAG	MSDHLLTTKDDLVEFRRVINSIRCRVEYDIVNHPLNTEFEELEVLLHDAVVKLDEIHDKMKEHVYAFDVSVTVSRRVYVKASDECDAEQAAMDYAVSELDCPIDWNEDDVQVFRDEDEETTSVYDVEV