Scaffold Ga0181577_10002127

Overview

Basic Information

• Taxon OID: 3300017951
• Scaffold ID: Ga0181577_10002127
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15655
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (46.88%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (38.46%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001841	Metagenome / Metatranscriptome	627	Y
F002867	Metagenome / Metatranscriptome	524	Y
F003805	Metagenome / Metatranscriptome	467	Y
F004722	Metagenome	426	Y
F006109	Metagenome	381	Y
F014614	Metagenome / Metatranscriptome	261	Y
F016805	Metagenome / Metatranscriptome	244	N
F017824	Metagenome	238	N
F025016	Metagenome / Metatranscriptome	203	Y
F027171	Metagenome / Metatranscriptome	195	N
F047029	Metagenome	150	N
F051901	Metagenome	143	N
F088830	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181577_1000212710	F051901	AGG	MTPPPKINFTKAAADMARADYLDALFFKDGRNNPDHPFHGTYTGLYQKYTLEKLR
Ga0181577_1000212711	F017824	N/A	MNNAVMQWKEDYEKSQRLGEGRSRTSAEKAELFELMIWMGGQGAMRDLIRAESLQQAIKFAKNRYPNCRVDVPPKAAKKPKLARSHTSPSLVEKRRKKAAEGK
Ga0181577_1000212712	F006109	N/A	MTRYVVMAGDRWVTAIYGPGKGIGVTSNKEDASSWPNYERAVVAARAAADCTNSPVAVHSIEEPSYRKA
Ga0181577_1000212714	F004722	GAG	MSRTGREMMLEWLYREIRLAKTADLQRAAAFLEWARGIRKGCSKQRGGARVAQANAWRKRVDGDVRW
Ga0181577_1000212715	F047029	GGCGG	MSEAVGSTPNNPIKLNQYRVTLYPKHGATENIYMEAPDVYTAHMYTRRVYPDHRILAIKPVVDLVEDRVS
Ga0181577_1000212724	F014614	N/A	MTDWYADYYRQSRGYNWNDLRELHSQPRRPSTSVPDCFKHEFADRAAYDAWVEEKRQDYF
Ga0181577_1000212726	F027171	GGAGG	VSQVLEIESLEFDPDGLIRVTAVVDEVVLTHHATQWDPEEYGSALCRGSFYLSDEDLIPATDAELAKLIAERVDDWAPIDPDE
Ga0181577_1000212727	F088830	N/A	MGRSEMACPFLLNYMEYTIKTDSLKLSSWYYAVLASKAVLQQKITELEGDSFFSPAFYIDKLEDLEDLEMFLKMSWDEWLASLAIDQTAVEETK
Ga0181577_1000212728	F001841	GAG	MIRYQVPNLFLGLMRVAAWLFWRDPVAKSEPPQPKRPRKPILGYNVGDIPYELMAVVRVEWYRKGMAYEVEEYQIEECPDAQAQFQYIVGTALKQGADVSVLTQYEPSALGVEE
Ga0181577_100021274	F016805	N/A	VDPFLTPLATAAIIAGVGALWRIDKRASIMDTRMALILEQITALRSDHKERLDDHERRIRTIEQKL
Ga0181577_100021275	F002867	N/A	VTTTVHSTCFEGGYKLEQMENERNEIYYRACKDSICRYAEDEYIARMYLEGMGWDPMQPPLP
Ga0181577_100021277	F025016	N/A	MDPTTLAALAILAAAGSEILTLLPIRSNSWVQLVISILNAISRKKS
Ga0181577_100021279	F003805	N/A	MRPLEHSTESCFHKAATDQWLVDRFNSGDYRGLLEAALILNTLHQLEKTKANWAIHEAADNLADHFGLDRDSA